Stem-loop mdo-mir-93

Accession

MI0005369

Description

Monodelphis domestica mdo-mir-93 precursor miRNA

Sequence

10139 reads, 167 reads per million, 5 experiments

agucuuggggggcuccAAAGUGCUGUUCGUGCAGGUAGugugauaaccugaccuACUGCUGAGCUAGCACUUCCAGagccccugggaca
.((((..((((((((..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))...)))))))).)))).

Structure

a    ug        -cA       -     U    G   u  g u 
 gucu  gggggcuc   AAGUGCU GUUCG GCAG UAG gu a a
 ||||  ||||||||   ||||||| ||||| |||| ||| || | a
 cagg  uccccgaG   UUCACGA CGAGU CGUC Auc ca u c
a    -g        ACC       U     -    -   -  g c 

Annotation confidence Not enough data

Genome context

chr2: 257689983-257690071 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-93

Mature mdo-miR-93-5p

• Accession: MIMAT0004178
• Description: Monodelphis domestica mdo-miR-93-5p mature miRNA
• Sequence: 17 - AAAGUGCUGUUCGUGCAGGUAG - 38
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-93-3p

• Accession: MIMAT0026715
• Description: Monodelphis domestica mdo-miR-93-3p mature miRNA
• Sequence: 55 - ACUGCUGAGCUAGCACUUCCAG - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45