miRBase entry: dre-mir-18b

Stem-loop dre-mir-18b


Accession
MI0001901
Description
Danio rerio dre-mir-18b precursor miRNA mir-17
Gene
family?
RF00051; mir-17

Literature search
2 open access papers mention dre-mir-18b
(2 sentences)

Sequence

1155 reads, 158 reads per million, 11 experiments
uacugcuuaugcUAAGGUGCAUUUAGUGCAGAUAgugaaauagacuagcaccuaCUGCCCUAAGUGCCCCUUCUGGcauaaggggcu
..((.((((((((((((.((((((((.((((.(((((...........)).))))))).)))))))).)))..))))))))).))..

Structure
ua  g         --   U        U    A   -  aaau 
  cu cuuaugcUA  AGG GCAUUUAG GCAG UAg ug    a
  || |||||||||  ||| |||||||| |||| ||| ||    g
  gg gaauacGGU  UCC CGUGAAUC CGUC auc ac    a
uc  g         CU   C        C    -   c  gauc 


Annotation confidence Not enough data
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Genome context
chr9: 53436831-53436917 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-18b-5p

Accession MIMAT0001780
Description Danio rerio dre-miR-18b-5p mature miRNA
Sequence 13 - UAAGGUGCAUUUAGUGCAGAUA - 34
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-18b-3p

Accession MIMAT0003397
Description Danio rerio dre-miR-18b-3p mature miRNA
Sequence 55 - CUGCCCUAAGUGCCCCUUCUGG - 76
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293