Stem-loop xla-mir-20

Accession

MI0001453

Description

Xenopus laevis xla-mir-20 precursor miRNA

Literature search

1 open access papers mention xla-mir-20
(1 sentences)

Sequence

7397 reads, 231.0 reads per million, 18 experiments

gcaguucCAAAGUGCUCAUAGUGCAGGUAGuuguauucauguucuACUGUAAUAUGGGCACUUACAguacugcu
(((((....(((((((((((.(((((.(((.............)))))))).))))))))))).....))))).

Structure

-     -ucCA           G     G   uugua 
 gcagu     AAGUGCUCAUA UGCAG UAG     u
 |||||     ||||||||||| ||||| |||     u
 cguca     UUCACGGGUAU AUGUC Auc     c
u     ugACA           A     -   uugua 

Annotation confidence High

Genome context

chr8L: 48822066-48822139 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xla-mir-20

Mature xla-miR-20-5p

• Accession: MIMAT0001348
• Description: Xenopus laevis xla-miR-20-5p mature miRNA
• Sequence: 8 - CAAAGUGCUCAUAGUGCAGGUAG - 30
• Evidence: experimental ; cloned [1]

Mature xla-miR-20-3p

• Accession: MIMAT0052063
• Description: Xenopus laevis xla-miR-20-3p mature miRNA
• Sequence: 46 - ACUGUAAUAUGGGCACUUACA - 66
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15642338
   Stage-specific expression of microRNAs during Xenopus development
   "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
   "FEBS Lett (2005) 579:318-324