Stem-loop eca-mir-18a

Accession

MI0012832

Description

Equus caballus eca-mir-18a precursor miRNA

Literature search

13 open access papers mention eca-mir-18a
(112 sentences)

Sequence

37525 reads, 237.0 reads per million, 198 experiments

UAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUC
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))).

Structure

U    U    C   U    A   -  aa u 
 AAGG GCAU UAG GCAG UAG ug  g a
 |||| |||| ||| |||| ||| ||  | g
 UUCC CGUG AUC CGUC Auc ac  u a
C    U    A   C    -   u  ga u 

Annotation confidence High

Genome context

17: 61685182-61685242 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-18a

Mature eca-miR-18a-5p

• Accession: MIMAT0013085
• Description: Equus caballus eca-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: not_experimental

Mature eca-miR-18a-3p

• Accession: MIMAT0051415
• Description: Equus caballus eca-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUC - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131