Stem-loop ptr-mir-106b

Accession

MI0003070

Description

Pan troglodytes ptr-mir-106b precursor miRNA

Literature search

6 open access papers mention ptr-mir-106b
(16 sentences)

Sequence

5010 reads, 59.0 reads per million, 24 experiments

ccugccggggcUAAAGUGCUGACAGUGCAGAUAgugguccucuccgugcuaCCGCACUGUGGGUACUUGCUGcuccagcagg
(((((.(((((..(((((((.(((((((.(.((((((......))..))))).))))))).)))))))...))))).)))))

Structure

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G UAgu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucG   UUCAUGG UGUCACG C aucg  cc  u
     a     UCG       G       C -    ug  uc 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 103151247-103151328 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-106b

Mature ptr-miR-106b-5p

• Accession: MIMAT0002769
• Description: Pan troglodytes ptr-miR-106b-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAUA - 33
• Evidence: not_experimental

Mature ptr-miR-106b-3p

• Accession: MIMAT0052250
• Description: Pan troglodytes ptr-miR-106b-3p mature miRNA
• Sequence: 52 - CCGCACUGUGGGUACUUGCUG - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24