Stem-loop eca-mir-20b

Accession

MI0012950

Description

Equus caballus eca-mir-20b precursor miRNA

Literature search

5 open access papers mention eca-mir-20b
(6 sentences)

Sequence

8963 reads, 713.0 reads per million, 163 experiments

aguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcauuacucuACUGUAGUGUGGGCACUUCCAGUacu
(((((..(((((((((((.(((((..(((.........)))...))))).)))))))))))...)))))

Structure

     -CA           G     -GU   uuu 
aguac   AAGUGCUCAUA UGCAG   AGu   g
|||||   ||||||||||| |||||   |||   g
ucaUG   UUCACGGGUGU AUGUC   uca   c
     ACC           G     Auc   uua 

Annotation confidence High

Genome context

X: 110758793-110758861 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-20b

Mature eca-miR-20b-5p

• Accession: MIMAT0013202
• Description: Equus caballus eca-miR-20b-5p mature miRNA
• Sequence: 6 - CAAAGUGCUCAUAGUGCAGGUAG - 28
• Evidence: not_experimental

Mature eca-miR-20b-3p

• Accession: MIMAT0051483
• Description: Equus caballus eca-miR-20b-3p mature miRNA
• Sequence: 44 - ACUGUAGUGUGGGCACUUCCAGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131