Stem-loop ssc-mir-20a

Accession

MI0002423

Description

Sus scrofa ssc-mir-20a precursor miRNA

Literature search

15 open access papers mention ssc-mir-20a
(33 sentences)

Sequence

2401 reads, 736 reads per million, 11 experiments

guagcacUAAAGUGCUUAUAGUGCAGGUAguguuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAg    u
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 

Annotation confidence Not enough data

Genome context

chr11: 66610513-66610583 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ssc-mir-20a

Mature ssc-miR-20a-5p

• Accession: MIMAT0002129
• Description: Sus scrofa ssc-miR-20a-5p mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUA - 29
• Evidence: experimental ; Illumina [2,4], cloned [3]

Mature ssc-miR-20a-3p

• Accession: MIMAT0037316
• Description: Sus scrofa ssc-miR-20a-3p mature miRNA
• Sequence: 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252