Stem-loop ola-mir-20a-2

Accession

MI0019539

Description

Oryzias latipes ola-mir-20a-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-20a-2
(4 sentences)

Sequence

90615 reads, 972.0 reads per million, 49 experiments

aauccacucagguuucaguaguauUAAAGUGCUUAUAGUGCAGGUAGUucuguggauuucuACUGCAGUGUGAGCACUUGAAGUacuucuagccuucgucuu
.....((..(((((..((.((((((.(((((((((((.(((((..(((((...)))))....))))).)))))))))))..)))))).)))))))..))...

Structure

aaucc  uc     uc  u      -A           G     --GU     u 
     ac  agguu  ag aguauU  AAGUGCUUAUA UGCAG    AGUuc  
     ||  |||||  || ||||||  ||||||||||| |||||    ||||| g
     ug  uccga  uc ucaUGA  UUCACGAGUGU ACGUC    uuagg  
--uuc  cu     --  u      AG           G     Aucu     u 

Annotation confidence Medium

Genome context

21: 25693363-25693464 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-20a-2

Mature ola-miR-20a-5p

• Accession: MIMAT0022533
• Description: Oryzias latipes ola-miR-20a-5p mature miRNA
• Sequence: 25 - UAAAGUGCUUAUAGUGCAGGUAGU - 48
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-20a-2-3p

• Accession: MIMAT0057072
• Description: Oryzias latipes ola-miR-20a-2-3p mature miRNA
• Sequence: 62 - ACUGCAGUGUGAGCACUUGAAGU - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8