Stem-loop tni-mir-18

Accession

MI0003234

Description

Tetraodon nigroviridis tni-mir-18 precursor miRNA

Sequence

568 reads, 21.0 reads per million, 3 experiments

uugugcUAAGGUGCAUCUAGUGCAGAUAgugaaauagacuagcaccuACUGCCCUAAGUGCUCCUUCUggcauaag
(((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))).

Structure

-        --   U    C   U    A   -  aaau 
 uugugcUA  AGG GCAU UAG GCAG UAg ug    a
 ||||||||  ||| |||| ||| |||| ||| ||    g
 aauacggU  UCC CGUG AUC CGUC Auc ac    a
g        CU   U    A   C    -   c  gauc 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

5: 8188729-8188804 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tni-mir-18

Mature tni-miR-18-5p

• Accession: MIMAT0002919
• Description: Tetraodon nigroviridis tni-miR-18-5p mature miRNA
• Sequence: 7 - UAAGGUGCAUCUAGUGCAGAUA - 28
• Evidence: not_experimental

Mature tni-miR-18-3p

• Accession: MIMAT0052935
• Description: Tetraodon nigroviridis tni-miR-18-3p mature miRNA
• Sequence: 48 - ACUGCCCUAAGUGCUCCUUCU - 68
• Evidence: not_experimental

References