Stem-loop ssa-mir-20b

Accession

MI0026604

Description

Salmo salar ssa-mir-20b precursor miRNA

Literature search

1 open access papers mention ssa-mir-20b
(3 sentences)

Sequence

21489 reads, 88.0 reads per million, 87 experiments

CAAAGUGCUCACAGUGCAGGUAGuuuaaaugaaccuACUGCAGUGUGUGCACUUCAAGu
..((((((.((((.(((((...((((....))))...))))).)))).)))))).....

Structure

---CA      U    G     GUA    a 
     AAGUGC CACA UGCAG   Guuu a
     |||||| |||| |||||   ||||  
     UUCACG GUGU ACGUC   caag a
uGAAC      U    G     Auc    u 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-20b-5p

• Accession: MIMAT0032506
• Description: Salmo salar ssa-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-20b-3p

• Accession: MIMAT0032507
• Description: Salmo salar ssa-miR-20b-3p mature miRNA
• Sequence: 37 - ACUGCAGUGUGUGCACUUCAAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482