Stem-loop chi-mir-93

Accession

MI0030841

Description

Capra hircus chi-mir-93 precursor miRNA

Literature search

53 open access papers mention chi-mir-93
(420 sentences)

Sequence

176237 reads, 543.0 reads per million, 36 experiments

cugggggcucCAAAGUGCUGUUCGUGCAGGUagugugaucaccugaccuACUGCUGAGCCAGCACUUCCCGAgccc
....((((((..((((((((((((.((((.(((.((.(.....).))))))))))))).))))))))...))))))

Structure

cugg      -CA        -    U    G   u  g u 
    gggcuc   AAGUGCUG UUCG GCAG Uag gu a c
    ||||||   |||||||| |||| |||| ||| || | a
    cccgAG   UUCACGAC GAGU CGUC Auc ca u c
----      CCC        C    -    -   -  g c 

Annotation confidence Medium

Genome context

Unknown

Mature chi-miR-93-5p

• Accession: MIMAT0036305
• Description: Capra hircus chi-miR-93-5p mature miRNA
• Sequence: 11 - CAAAGUGCUGUUCGUGCAGGU - 31
• Evidence: experimental ; Illumina [1]

Mature chi-miR-93-3p

• Accession: MIMAT0036306
• Description: Capra hircus chi-miR-93-3p mature miRNA
• Sequence: 50 - ACUGCUGAGCCAGCACUUCCCGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40