Stem-loop eca-mir-17

Accession

MI0012831

Description

Equus caballus eca-mir-17 precursor miRNA

Literature search

28 open access papers mention eca-mir-17
(113 sentences)

Sequence

326631 reads, 1685.0 reads per million, 186 experiments

CAAAGUGCUUACAGUGCAGGUAGugauauaugugcaucuACUGCAGUGAAGGCACUUGU
..((((((((.((.(((((.(((((.........)).)))))))).)).))))))))..

Structure

CA        A  G     G   -  aua 
  AAGUGCUU CA UGCAG UAG ug   u
  |||||||| || ||||| ||| ||   a
  UUCACGGA GU ACGUC Auc ac   u
UG        A  G     -   u  gug 

Annotation confidence High

Genome context

17: 61685042-61685100 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-17

Mature eca-miR-17-5p

• Accession: MIMAT0013084
• Description: Equus caballus eca-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: not_experimental

Mature eca-miR-17-3p

• Accession: MIMAT0051414
• Description: Equus caballus eca-miR-17-3p mature miRNA
• Sequence: 40 - ACUGCAGUGAAGGCACUUGU - 59
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131