Stem-loop dre-mir-18c

Accession

MI0001902

Description

Danio rerio dre-mir-18c precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

3 open access papers mention dre-mir-18c
(3 sentences)

Sequence

267880 reads, 457.0 reads per million, 269 experiments

gccuuccugcUAAGGUGCAUCUUGUGUAGUUAgugaaguagucuaguaucuACUGCGCUAGAUGUUCCUUUUGgcaggaguagcu
((.((((((((((((.((((((.(((((((..(((.((....))..)))..))))))).)))))).)))..)))))))))..)).

Structure

-  -c         --   U      U       UA   -a  u 
 gc  uuccugcUA  AGG GCAUCU GUGUAGU  gug  ag a
 ||  |||||||||  ||| |||||| |||||||  |||  ||  
 cg  gaggacgGU  UCC UGUAGA CGCGUCA  uau  uc g
u  au         UU   U      U       uc   ga  u 

Annotation confidence High

Genome context

chr14: 31467376-31467460 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-18c

Mature dre-miR-18c-5p

• Accession: MIMAT0001781
• Description: Danio rerio dre-miR-18c-5p mature miRNA
• Sequence: 11 - UAAGGUGCAUCUUGUGUAGUUA - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-18c-3p

• Accession: MIMAT0060868
• Description: Danio rerio dre-miR-18c-3p mature miRNA
• Sequence: 52 - ACUGCGCUAGAUGUUCCUUUUG - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293