miRBase entry: dre-mir-18c

Stem-loop dre-mir-18c

Accession

MI0001902

Description

Danio rerio dre-mir-18c precursor miRNA mir-17

Gene
family?

RF00051; mir-17

Literature search

2 open access papers mention dre-mir-18c
(2 sentences)

Sequence

38801 reads, 1983 reads per million, 11 experiments

gccuuccugcUAAGGUGCAUCUUGUGUAGUUAgugaaguagucuaguaucuacugcgcuagauguuccuuuuggcaggaguagcu
((.((((((((((((.((((((.(((((((..(((.((....))..)))..))))))).)))))).)))..)))))))))..)).

Structure

-  -c         --   U      U       UA   -a  u 
 gc  uuccugcUA  AGG GCAUCU GUGUAGU  gug  ag a
 ||  |||||||||  ||| |||||| |||||||  |||  ||  
 cg  gaggacggu  ucc uguaga cgcguca  uau  uc g
u  au         uu   u      u       uc   ga  u

Annotation confidence High

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Genome context

chr14: 31467376-31467460 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-18c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-18c

Accession	MIMAT0001781
Description	Danio rerio dre-miR-18c mature miRNA
Sequence	11 - UAAGGUGCAUCUUGUGUAGUUA - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293