Stem-loop xtr-mir-20a

Accession

MI0004911

Description

Xenopus tropicalis xtr-mir-20a precursor miRNA

Literature search

4 open access papers mention xtr-mir-20a
(8 sentences)

Sequence

17330 reads, 2106.0 reads per million, 4 experiments

gcuaaaguggugcUAAAGUGCUUAUAGUGCAGGUaguuuuucuguauucuACUGCAUAAUGAGCACUUAAAGUacuccuagcug
(((..((.((((((.((((((((((.((((((.(((..(......)..))))))))).))))))))))..)))))).)))))..

Structure

--   aa  u      -A          A      G   uu uu 
  gcu  ag ggugcU  AAGUGCUUAU GUGCAG Uag  u  c
  |||  || ||||||  |||||||||| |||||| |||  |   
  cga  uc ucaUGA  UUCACGAGUA UACGUC Auc  a  u
gu   --  c      AA          A      -   uu ug 

Annotation confidence High

Genome context

2: 123388085-123388168 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xtr-mir-20a

Mature xtr-miR-20a-5p

• Accession: MIMAT0003669
• Description: Xenopus tropicalis xtr-miR-20a-5p mature miRNA
• Sequence: 14 - UAAAGUGCUUAUAGUGCAGGU - 34
• Evidence: not_experimental

Mature xtr-miR-20a-3p

• Accession: MIMAT0003670
• Description: Xenopus tropicalis xtr-miR-20a-3p mature miRNA
• Sequence: 51 - ACUGCAUAAUGAGCACUUAAAGU - 73
• Evidence: not_experimental

References