Stem-loop tgu-mir-106

Accession

MI0013818

Description

Taeniopygia guttata tgu-mir-106 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention tgu-mir-106
(1 sentences)

Sequence

caaguugugcAAAAGUGCUUACAGUGCAGGUAGaguucaggaucuACUGCAGUUUAAGCACUUCUGGcauuac
...((.((((..(((((((((.(.(((((.((((........))))))))).).)))))))))...)))).))

Structure

caa  u    -AA         C G     G    guu 
   gu gugc   AAGUGCUUA A UGCAG UAGa   c
   || ||||   ||||||||| | ||||| ||||    
   ca uacG   UUCACGAAU U ACGUC Aucu   a
---  u    GUC         U G     -    agg 

Annotation confidence Not enough data

Genome context

chr4A: 7273746-7273818 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-106

Mature tgu-miR-106-5p

• Accession: MIMAT0014590
• Description: Taeniopygia guttata tgu-miR-106-5p mature miRNA
• Sequence: 11 - AAAAGUGCUUACAGUGCAGGUAG - 33
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-106-3p

• Accession: MIMAT0027016
• Description: Taeniopygia guttata tgu-miR-106-3p mature miRNA
• Sequence: 46 - ACUGCAGUUUAAGCACUUCUGG - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727