Stem-loop bta-mir-93

Accession

MI0005050

Description

Bos taurus bta-mir-93 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

8 open access papers mention bta-mir-93
(60 sentences)

Sequence

53342 reads, 618 reads per million, 75 experiments

cugggggcucCAAAGUGCUGUUCGUGCAGGUAgugugaucaccugaccuacugcugagccagcacuucccgagcccc
...(((((((..((((((((((((.((((.(((.((.(.....).))))))))))))).))))))))...)))))))

Structure

cug       -CA        -    U    G   u  g u 
   ggggcuc   AAGUGCUG UUCG GCAG UAg gu a c
   |||||||   |||||||| |||| |||| ||| || | a
   ccccgag   uucacgac gagu cguc auc ca u c
---       ccc        c    -    -   -  g c 

Annotation confidence High

Genome context

chr25: 37072517-37072593 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-93

Mature bta-miR-93

• Accession: MIMAT0003837
• Description: Bos taurus bta-miR-93 mature miRNA
• Sequence: 11 - CAAAGUGCUGUUCGUGCAGGUA - 32
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43