Stem-loop oha-mir-20a

Accession

MI0031410

Description

Ophiophagus hannah oha-mir-20a precursor miRNA

Sequence

uccuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuucauaaucuACUGCAUUAGGAGCACUUAAAGuacuacuag
....((((.(((.((((((((.((((((((.(((.(((....)))))))))))))).))))))))..))).))))...

Structure

uccu    c   -A        A        G   u   u 
    guag acU  AAGUGCUU UAGUGCAG UAG guu c
    |||| |||  |||||||| |||||||| ||| |||  
    cauc uGA  UUCACGAG AUUACGUC Auc uaa a
-gau    a   AA        G        -   -   u 

Annotation confidence Low

Genome context

AZIM01002132.1: 157971-158048 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oha-mir-20a

Mature oha-miR-20a-5p

• Accession: MIMAT0036822
• Description: Ophiophagus hannah oha-miR-20a-5p mature miRNA
• Sequence: 12 - UAAAGUGCUUAUAGUGCAGGUAG - 34
• Evidence: not_experimental

Mature oha-miR-20a-3p

• Accession: MIMAT0036823
• Description: Ophiophagus hannah oha-miR-20a-3p mature miRNA
• Sequence: 48 - ACUGCAUUAGGAGCACUUAAAG - 69
• Evidence: not_experimental

References

1. PubMed ID: 24297900
   The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
   "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
   "Proc Natl Acad Sci U S A (2013) 110:20651-20656