Stem-loop ssc-mir-106a

Accession

MI0002412

Description

Sus scrofa ssc-mir-106a precursor miRNA

Literature search

21 open access papers mention ssc-mir-106a
(45 sentences)

Sequence

91176 reads, 139.0 reads per million, 202 experiments

ccuuggccguguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucUACUGCAAUGCAAGCACUUCUUacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure

  u   cc      -        A  G     G   C   u 
cc ugg  guguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacaUU UUCACGAA GU ACGUC AUc aga  
  u   au      C        C  A     -   u   g 

Annotation confidence High

Genome context

chrX: 126200183-126200263 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ssc-mir-106a

Mature ssc-miR-106a-5p

• Accession: MIMAT0002118
• Description: Sus scrofa ssc-miR-106a-5p mature miRNA
• Sequence: 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-106a-3p

• Accession: MIMAT0052545
• Description: Sus scrofa ssc-miR-106a-3p mature miRNA
• Sequence: 48 - UACUGCAAUGCAAGCACUUCUU - 69
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100