Stem-loop cfa-mir-17

Accession

MI0008050

Description

Canis lupus familiaris cfa-mir-17 precursor miRNA

Literature search

23 open access papers mention cfa-mir-17
(54 sentences)

Sequence

528709 reads, 426.0 reads per million, 82 experiments

CAAAGUGCUUACAGUGCAGGUAGugauaugugcaucuACUGCAGUGAAGGCACUUGUAG
..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))....

Structure

--CA        A  G     G   -  au 
    AAGUGCUU CA UGCAG UAG ug  a
    |||||||| || ||||| ||| ||  u
    UUCACGGA GU ACGUC Auc ac  g
GAUG        A  G     -   u  gu 

Annotation confidence High

Genome context

22: 42879262-42879320 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-17

Mature cfa-miR-17-5p

• Accession: MIMAT0051764
• Description: Canis lupus familiaris cfa-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-17-3p

• Accession: MIMAT0006649
• Description: Canis lupus familiaris cfa-miR-17-3p mature miRNA
• Sequence: 38 - ACUGCAGUGAAGGCACUUGUAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415