Stem-loop ssa-mir-17-1

Accession

MI0026535

Description

Salmo salar ssa-mir-17-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-17-1
(9 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGucaucuaauaucuaCUGCAGUGAAGGCACUUUAAGCA
.(((((((((.((.(((((.(((...........)))))))).)).))))))))).....

Structure

----C         A  G     G   ucau 
     AAAGUGCUU CA UGCAG UAG    c
     ||||||||| || ||||| |||    u
     UUUCACGGA GU ACGUC auc    a
ACGAA         A  G     -   uaua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-17-5p

• Accession: MIMAT0032414
• Description: Salmo salar ssa-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-17-3p

• Accession: MIMAT0032416
• Description: Salmo salar ssa-miR-17-3p mature miRNA
• Sequence: 38 - CUGCAGUGAAGGCACUUUAAGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482