Stem-loop ola-mir-106a

Accession

MI0019473

Description

Oryzias latipes ola-mir-106a precursor miRNA

Sequence

22427 reads, 362.0 reads per million, 48 experiments

gcuuucauuagcugcccagcaugagaUAAAGUGCUUACAGUGCAGGUAGUgaucagaacagucuACUGCAGUGUGAGCACUUCUCUcccacgcugguccaaagcgcc
..........(((..(((((..((((..(((((((((((.(((((.(((.............)))))))).))))))))))).))))....))))).....)))...

Structure

gcuuucauua   ---gc     --au    UA           G     G   Ugauc 
          gcu     ccagc    gaga  AAGUGCUUACA UGCAG UAG     a
          |||     |||||    ||||  ||||||||||| ||||| |||     g
          cga     ggucg    cUCU  UUCACGAGUGU ACGUC Auc     a
-------ccg   aaccu     cacc    -C           G     -   ugaca 

Annotation confidence Medium

Genome context

10: 2001187-2001293 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-106a

Mature ola-miR-106a-5p

• Accession: MIMAT0022591
• Description: Oryzias latipes ola-miR-106a-5p mature miRNA
• Sequence: 27 - UAAAGUGCUUACAGUGCAGGUAGU - 50
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-106a-3p

• Accession: MIMAT0057112
• Description: Oryzias latipes ola-miR-106a-3p mature miRNA
• Sequence: 65 - ACUGCAGUGUGAGCACUUCUCU - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8