miRBase entry: ola-mir-106a

Stem-loop ola-mir-106a

Accession

MI0019473

Description

Oryzias latipes ola-mir-106a precursor miRNA

Sequence

gcuuucauuagcugcccagcaugagaUAAAGUGCUUACAGUGCAGGUagugaucagaacagucuacugcagugugagcacuucucucccacgcugguccaaagcgcc
..........(((..(((((..((((..(((((((((((.(((((.(((.............)))))))).))))))))))).))))....))))).....)))...

Structure

gcuuucauua   ---gc     --au    UA           G     G   ugauc 
          gcu     ccagc    gaga  AAGUGCUUACA UGCAG Uag     a
          |||     |||||    ||||  ||||||||||| ||||| |||     g
          cga     ggucg    cucu  uucacgagugu acguc auc     a
-------ccg   aaccu     cacc    -c           g     -   ugaca

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

10: 2001187-2001293 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-106a

Accession	MIMAT0022591
Description	Oryzias latipes ola-miR-106a mature miRNA
Sequence	27 - UAAAGUGCUUACAGUGCAGGU - 47
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8