Stem-loop mdo-mir-20a

Accession

MI0005357

Description

Monodelphis domestica mdo-mir-20a precursor miRNA

Sequence

17515 reads, 293 reads per million, 5 experiments

ugaaaggacagcuuuuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUGAAGUacugcuagcuguagaacuac
.......((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))))))........

Structure

-ugaaagg      uuu    c   -A                 G   uguu 
        acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    u
        ||||||   |||| |||  ||||||||||||||||| |||    a
        ugucga   cguc UGA  UUCACGAGUAUUACGUC Auc    g
caucaaga      --u    a   AG                 -   uauu 

Annotation confidence Medium

Genome context

chr7: 108468430-108468531 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-20a

Mature mdo-miR-20a-5p

• Accession: MIMAT0004169
• Description: Monodelphis domestica mdo-miR-20a-5p mature miRNA
• Sequence: 24 - UAAAGUGCUUAUAGUGCAGGUAG - 46
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-20a-3p

• Accession: MIMAT0026707
• Description: Monodelphis domestica mdo-miR-20a-3p mature miRNA
• Sequence: 60 - ACUGCAUUAUGAGCACUUGAAGU - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45