Stem-loop cfa-mir-20a

Accession

MI0008052

Description

Canis lupus familiaris cfa-mir-20a precursor miRNA

Literature search

13 open access papers mention cfa-mir-20a
(17 sentences)

Sequence

1017419 reads, 906.0 reads per million, 82 experiments

UAAAGUGCUUAUAGUGCAGGUAGuguuucguuaucuACUGCAUUAUGAGCACUUAAAGU
..(((((((((((((((((.(((...........)))))))))))))))))))).....

Structure

---UA                 G   uguu 
     AAGUGCUUAUAGUGCAG UAG    u
     ||||||||||||||||| |||    c
     UUCACGAGUAUUACGUC Auc    g
UGAAA                 -   uauu 

Annotation confidence High

Genome context

22: 42879711-42879769 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-20a

Mature cfa-miR-20a-5p

• Accession: MIMAT0006651
• Description: Canis lupus familiaris cfa-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-20a-3p

• Accession: MIMAT0051766
• Description: Canis lupus familiaris cfa-miR-20a-3p mature miRNA
• Sequence: 37 - ACUGCAUUAUGAGCACUUAAAGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415