Stem-loop ola-mir-17

Accession

MI0019542

Description

Oryzias latipes ola-mir-17 precursor miRNA

Literature search

8 open access papers mention ola-mir-17
(11 sentences)

Sequence

49768 reads, 581.0 reads per million, 48 experiments

uuucaagucacuguaguguCAAAGUGCUUACAGUGCAGGUAGUuuucuaaaaaucuACUGCAGUGAAGGCACUUUCAGCacuguugugauaauguga
......(((((..((((((.(((((((((.((.(((((.(((.(((....))).)))))))).)).)))))))))..))))))..))))).......

Structure

-uuucaa     ug      -C         A  G     G   U   c 
       gucac  uagugu  AAAGUGCUU CA UGCAG UAG uuu u
       |||||  ||||||  ||||||||| || ||||| ||| |||  
       uagug  gucaCG  UUUCACGGA GU ACGUC Auc aaa a
aguguaa     uu      AC         A  G     -   u   a 

Annotation confidence High

Genome context

21: 25694055-25694151 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-17

Mature ola-miR-17-5p

• Accession: MIMAT0022654
• Description: Oryzias latipes ola-miR-17-5p mature miRNA
• Sequence: 20 - CAAAGUGCUUACAGUGCAGGUAGU - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-17-3p

• Accession: MIMAT0057158
• Description: Oryzias latipes ola-miR-17-3p mature miRNA
• Sequence: 57 - ACUGCAGUGAAGGCACUUUCAGC - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8