Stem-loop efu-mir-106

Accession

MI0028872

Description

Eptesicus fuscus efu-mir-106 precursor miRNA

Sequence

23442 reads, 316.0 reads per million, 8 experiments

ccugcuggggcUAAAGUGCUGACAGUGCAGAUagugguccucucgugcUACCGCACUGUGGGUACUUGCUGCUccagcagggc
(((((((((((..(((((((.(((((((.(.(((((.........)))))).))))))).)))))))...)))))))))))..

Structure

--           -UA       G       A A     guc 
  ccugcuggggc   AAGUGCU ACAGUGC G Uagug   c
  |||||||||||   ||||||| ||||||| | |||||   u
  ggacgaccUCG   UUCAUGG UGUCACG C AUcgu   c
cg           UCG       G       C -     gcu 

Annotation confidence High

Genome context

JH977625.1: 7045231-7045313 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-106

Mature efu-miR-106-5p

• Accession: MIMAT0058909
• Description: Eptesicus fuscus efu-miR-106-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAU - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-106-3p

• Accession: MIMAT0035164
• Description: Eptesicus fuscus efu-miR-106-3p mature miRNA
• Sequence: 49 - UACCGCACUGUGGGUACUUGCUGCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545