Stem-loop ppy-mir-93

Accession

MI0003068

Description

Pongo pygmaeus ppy-mir-93 precursor miRNA

Literature search

1 open access papers mention ppy-mir-93
(2 sentences)

Sequence

cugggggcuccAAAGUGCUGUUCGUGCAGGUAGugugauuacccgaccuacugcugagcuagcacuucccgagcccccgg
((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))

Structure

          -cA       -     U    G   u  gau 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
||||||||||   ||||||| ||||| |||| ||| ||   a
ggcccccgag   uucacga cgagu cguc auc ca   c
          ccc       u     -    -   -  gcc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 9079061-9079140 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-93

Mature ppy-miR-93

• Accession: MIMAT0002767
• Description: Pongo pygmaeus ppy-miR-93 mature miRNA
• Sequence: 12 - AAAGUGCUGUUCGUGCAGGUAG - 33
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24