miRBase entry: ccr-mir-18a

Stem-loop ccr-mir-18a


Accession
MI0023350
Description
Cyprinus carpio ccr-mir-18a precursor miRNA


Sequence

12747 reads, 79.0 reads per million, 33 experiments
cUAAGGUGCAUCUAGUGCAGAUAGugaaguagacuagcaccuACUGCCCUAAGUGCUCCUUC
..((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))).

Structure
cU    U    C   U    A   -  aagu 
  AAGG GCAU UAG GCAG UAG ug    a
  |||| |||| ||| |||| ||| ||    g
  UUCC CGUG AUC CGUC Auc ac    a
-C    U    A   C    -   c  gauc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-18a-5p

Accession MIMAT0026246
Description Cyprinus carpio ccr-miR-18a-5p mature miRNA
Sequence 2 - UAAGGUGCAUCUAGUGCAGAUAG - 24
Evidence experimental
Illumina [1]

Mature ccr-miR-18a-3p

Accession MIMAT0058292
Description Cyprinus carpio ccr-miR-18a-3p mature miRNA
Sequence 43 - ACUGCCCUAAGUGCUCCUUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925