Stem-loop fru-mir-20

Accession

MI0003443

Description

Fugu rubripes fru-mir-20 precursor miRNA

Sequence

21314 reads, 231.0 reads per million, 12 experiments

agcaguauUAAAGUGCUUAUAGUGCAGGUAGuuacugauggucuACUGCAGUGUGAGCACUUCUaguacuucuagaugca
((.((((((((((((((((((.(((((.(((...(....)..)))))))).))))))))))).))))))).)).......

Structure

-------  c       -           G     G   uua u 
       ag aguauUA AAGUGCUUAUA UGCAG UAG   c g
       || ||||||| ||||||||||| ||||| |||   |  
       uc ucaugaU UUCACGAGUGU ACGUC Auc   g a
acguaga  u       C           G     -   -ug u 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 18584260-18584339 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-20

Mature fru-miR-20-5p

• Accession: MIMAT0003083
• Description: Fugu rubripes fru-miR-20-5p mature miRNA
• Sequence: 9 - UAAAGUGCUUAUAGUGCAGGUAG - 31
• Evidence: not_experimental

Mature fru-miR-20-3p

• Accession: MIMAT0052911
• Description: Fugu rubripes fru-miR-20-3p mature miRNA
• Sequence: 45 - ACUGCAGUGUGAGCACUUCU - 64
• Evidence: not_experimental

References