Stem-loop eca-mir-106b

Accession

MI0012797

Description

Equus caballus eca-mir-106b precursor miRNA

Literature search

7 open access papers mention eca-mir-106b
(8 sentences)

Sequence

410936 reads, 716.0 reads per million, 232 experiments

UAAAGUGCUGACAGUGCAGAUAgugguccucuccaugcUACCGCACUGUGGGUACUUGC
..(((((((.(((((((.(...((((......))))....).))))))).)))))))..

Structure

UA       G       A -AUA    uc 
  AAGUGCU ACAGUGC G    gugg  c
  ||||||| ||||||| |    ||||   
  UUCAUGG UGUCACG C    uacc  u
CG       G       C AUcg    uc 

Annotation confidence High

Genome context

13: 8115359-8115417 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-106b

Mature eca-miR-106b-5p

• Accession: MIMAT0013054
• Description: Equus caballus eca-miR-106b-5p mature miRNA
• Sequence: 1 - UAAAGUGCUGACAGUGCAGAUA - 22
• Evidence: experimental ; Illumina [1]

Mature eca-miR-106b-3p

• Accession: MIMAT0051396
• Description: Equus caballus eca-miR-106b-3p mature miRNA
• Sequence: 39 - UACCGCACUGUGGGUACUUGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131