Stem-loop efu-mir-17

Accession

MI0028684

Description

Eptesicus fuscus efu-mir-17 precursor miRNA

Sequence

49552 reads, 545.0 reads per million, 8 experiments

ucagaguaauguCAAAGUGCUUACAGUGCAGGUAGUGauaugugcaucuACUGCAGUGAAGGCACUUGUAGCAUuauggugaca
(((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..)))..

Structure

--   ga       -CA        A  G     G   -  au 
  uca  guaaugu   AAGUGCUU CA UGCAG UAG UG  a
  |||  |||||||   |||||||| || ||||| ||| ||  u
  agu  uauUACG   UUCACGGA GU ACGUC Auc ac  g
ac   gg       AUG        A  G     -   u  gu 

Annotation confidence Medium

Genome context

JH977750.1: 95455-95538 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from efu-mir-17

Mature efu-miR-17-5p

• Accession: MIMAT0058797
• Description: Eptesicus fuscus efu-miR-17-5p mature miRNA
• Sequence: 13 - CAAAGUGCUUACAGUGCAGGUAGUG - 37
• Evidence: experimental ; Illumina [1]

Mature efu-miR-17-3p

• Accession: MIMAT0034999
• Description: Eptesicus fuscus efu-miR-17-3p mature miRNA
• Sequence: 50 - ACUGCAGUGAAGGCACUUGUAGCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545