Stem-loop tgu-mir-18a

Accession

MI0013815

Description

Taeniopygia guttata tgu-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

cuuuuuguacUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuacugcccuaagugcuccuucu
...........((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..

Structure

cuuuuuguacU    U    C   U    A   -  aa u 
           AAGG GCAU UAG GCAG UAg ug  g a
           |||| |||| ||| |||| ||| ||  | g
           uucc cgug auc cguc auc ac  u a
---------uc    u    a   c    -   u  ga u 

Annotation confidence Not enough data

Genome context

chr1: 43202937-43203008 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-18a

Mature tgu-miR-18a

• Accession: MIMAT0014587
• Description: Taeniopygia guttata tgu-miR-18a mature miRNA
• Sequence: 11 - UAAGGUGCAUCUAGUGCAGAUA - 32
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727