Stem-loop ola-mir-20a-1

Accession

MI0019418

Description

Oryzias latipes ola-mir-20a-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-20a-1
(4 sentences)

Sequence

91262 reads, 1079.0 reads per million, 49 experiments

uccagugaucccaguuucagcaguacUAAAGUGCUUAUAGUGCAGGUAGUguuucuaccuuaucuACUGCAAUGUAAGCACUUGAAGUacuucuaacuguauuuuucug
..(((.((...(((((..((.((((((.(((((((((((.(((((((((.....)))))........)))).)))))))))))..)))))).)))))))....)).)))

Structure

uc   u  -ucc     uc  c      -A           G    --------     U 
  cag ga    caguu  ag aguacU  AAGUGCUUAUA UGCA        GGUAG g
  ||| ||    |||||  || ||||||  ||||||||||| ||||        ||||| u
  guc uu    gucaa  uc ucaUGA  UUCACGAAUGU ACGU        ccauc u
--   u  uuau     --  u      AG           A    CAucuauu     u 

Annotation confidence Medium

Genome context

3: 15107783-15107891 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-20a-1

Mature ola-miR-20a-5p

• Accession: MIMAT0022533
• Description: Oryzias latipes ola-miR-20a-5p mature miRNA
• Sequence: 27 - UAAAGUGCUUAUAGUGCAGGUAGU - 50
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-20a-1-3p

• Accession: MIMAT0057071
• Description: Oryzias latipes ola-miR-20a-1-3p mature miRNA
• Sequence: 66 - ACUGCAAUGUAAGCACUUGAAGU - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8