Stem-loop ssa-mir-20a-1

Accession

MI0026601

Description

Salmo salar ssa-mir-20a-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-20a-1
(6 sentences)

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuauauuaucuacaucuACUGCAAUGUGAGCACUUCCAGU
..(((((((((((.(((((((((........)))).....))))).))))))))))).....

Structure

---UA           G     -----    uau 
     AAGUGCUUAUA UGCAG     GUAG   a
     ||||||||||| |||||     ||||    
     UUCACGAGUGU ACGUC     cauc   u
UGACC           A     Aucua    uau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-20a-5p

• Accession: MIMAT0032502
• Description: Salmo salar ssa-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-20a-1-3p

• Accession: MIMAT0032503
• Description: Salmo salar ssa-miR-20a-1-3p mature miRNA
• Sequence: 40 - ACUGCAAUGUGAGCACUUCCAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482