Stem-loop ccr-mir-18c

Accession

MI0023352

Description

Cyprinus carpio ccr-mir-18c precursor miRNA

Sequence

64084 reads, 462.0 reads per million, 33 experiments

uuuuaauauggucuuccugcUAAGGUGCAUCUUGUGUAGUUAGugaaguaguauaguaucuACUGCGCUAGAUGCUCCUUUUGGcaggaggagcuguaua
.....((((((((((((((((((((.((((((.(((((((.((................))))))))).)))))).)))..))))))))))).)))))).

Structure

uuuua      -           --   U      U       U  ugaagua 
     auaugg ucuuccugcUA  AGG GCAUCU GUGUAGU AG       g
     |||||| |||||||||||  ||| |||||| ||||||| ||        
     uauguc aggaggacGGU  UCC CGUAGA CGCGUCA uc       u
----a      g           UU   U      U       -  uaugaua 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-18c-5p

• Accession: MIMAT0026248
• Description: Cyprinus carpio ccr-miR-18c-5p mature miRNA
• Sequence: 21 - UAAGGUGCAUCUUGUGUAGUUAG - 43
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-18c-3p

• Accession: MIMAT0058294
• Description: Cyprinus carpio ccr-miR-18c-3p mature miRNA
• Sequence: 62 - ACUGCGCUAGAUGCUCCUUUUGG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925