Stem-loop cfa-mir-93

Accession

MI0008110

Description

Canis lupus familiaris cfa-mir-93 precursor miRNA

Literature search

14 open access papers mention cfa-mir-93
(28 sentences)

Sequence

685367 reads, 909.0 reads per million, 82 experiments

CAAAGUGCUGUUCGUGCAGGUAGugugauuaccugaccuACUGCUGAGCUAGCACUUCCCG
..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))....

Structure

--CA       -     U    G   u  g u 
    AAGUGCU GUUCG GCAG UAG gu a u
    ||||||| ||||| |||| ||| || | a
    UUCACGA CGAGU CGUC Auc ca u c
GCCC       U     -    -   -  g c 

Annotation confidence High

Genome context

6: 9435781-9435841 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-93

Mature cfa-miR-93-5p

• Accession: MIMAT0006696
• Description: Canis lupus familiaris cfa-miR-93-5p mature miRNA
• Sequence: 1 - CAAAGUGCUGUUCGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-93-3p

• Accession: MIMAT0051816
• Description: Canis lupus familiaris cfa-miR-93-3p mature miRNA
• Sequence: 40 - ACUGCUGAGCUAGCACUUCCCG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415