Stem-loop bta-mir-23a

Accession

MI0005042

Description

Bos taurus bta-mir-23a precursor miRNA

Literature search

173 open access papers mention bta-mir-23a
(804 sentences)

Sequence

3808609 reads, 1465.0 reads per million, 321 experiments

ggccggcuGGGGUUCCUGGGGAUGGGAUUUgcugccugucacaaAUCACAUUGCCAGGGAUUUCCAaccgacc
((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).))

Structure

  c   c     -       G    G      c  c 
gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc ACCUU AGGGACC UUAC CUAaac ac g
  a   a     U       G    A      -  u 

Annotation confidence High

Genome context

7: 11838703-11838775 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-23a

Mature bta-miR-23a-5p

• Accession: MIMAT0050790
• Description: Bos taurus bta-miR-23a-5p mature miRNA
• Sequence: 9 - GGGGUUCCUGGGGAUGGGAUUU - 30
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-23a-3p

• Accession: MIMAT0003827
• Description: Bos taurus bta-miR-23a-3p mature miRNA
• Sequence: 45 - AUCACAUUGCCAGGGAUUUCCA - 66
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988