Stem-loop bta-mir-378-1

Accession

MI0009819

Description

Bos taurus bta-mir-378-1 precursor miRNA

Literature search

24 open access papers mention bta-mir-378-1
(108 sentences)

Sequence

8256810 reads, 4813.0 reads per million, 321 experiments

agggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagCACUGGACUUGGAGUCAGAAGGCcu
(((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))

Structure

   g  C              U    gu acc 
agg CU CUGACUCCAGGUCC GUGU  u   u
||| || |||||||||||||| ||||  |    
ucC GA GACUGAGGUUCAGG CACg  a   c
   G  A              U    au aag 

Annotation confidence High

Genome context

7: 61076253-61076318 [+]

Mature bta-miR-378-1-5p

• Accession: MIMAT0061009
• Description: Bos taurus bta-miR-378-1-5p mature miRNA
• Sequence: 5 - CUCCUGACUCCAGGUCCUGUGU - 26
• Evidence: experimental ; cloned [1]

Mature bta-miR-378-3p

• Accession: MIMAT0009305
• Description: Bos taurus bta-miR-378-3p mature miRNA
• Sequence: 42 - CACUGGACUUGGAGUCAGAAGGC - 64
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125