Stem-loop bta-mir-378-1

Accession

MI0009819

Description

Bos taurus bta-mir-378-1 precursor miRNA

Gene family

MIPF0000168; mir-378

Literature search

24 open access papers mention bta-mir-378-1
(101 sentences)

Sequence

535504 reads, 4644 reads per million, 77 experiments

agggcuccugacuccagguccuguguguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcu
(((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))

Structure

   g  c              u    gu acc 
agg cu cugacuccaggucc gugu  u   u
||| || |||||||||||||| ||||  |    
ucC GA GACUGAGGUUCAGG CAcg  a   c
   G  A              U    au aag 

Annotation confidence High

Genome context

chr7: 63343197-63343262 [+]

Mature bta-miR-378

• Accession: MIMAT0009305
• Description: Bos taurus bta-miR-378 mature miRNA
• Sequence: 43 - ACUGGACUUGGAGUCAGAAGGC - 64
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125