Stem-loop bta-mir-129-1

Accession

MI0009728

Description

Bos taurus bta-mir-129-1 precursor miRNA

Literature search

7 open access papers mention bta-mir-129-1
(13 sentences)

Sequence

53502 reads, 65.0 reads per million, 295 experiments

ggauCUUUUUGCGGUCUGGGCUUGCUGuuccucucuacaguagucaggAAGCCCUUACCCCAAAAAGUAUcu
(((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))

Structure

    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU CUG  c  cu u
|||| ||||||| |||  |||||| |||  |  ||  
ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
    U       C   UU      g   -u au  c 

Annotation confidence High

Genome context

4: 92407943-92408014 [+]

Mature bta-miR-129-5p

• Accession: MIMAT0009221
• Description: Bos taurus bta-miR-129-5p mature miRNA
• Sequence: 5 - CUUUUUGCGGUCUGGGCUUGCUG - 27
• Evidence: experimental ; cloned [3]

Mature bta-miR-129-3p

• Accession: MIMAT0009222
• Description: Bos taurus bta-miR-129-3p mature miRNA
• Sequence: 49 - AAGCCCUUACCCCAAAAAGUAU - 70
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125