Stem-loop bta-mir-193b

Accession

MI0009764

Description

Bos taurus bta-mir-193b precursor miRNA mir-193

Gene
family

RF01895; mir-193

Literature search

54 open access papers mention bta-mir-193b
(294 sentences)

Sequence

451412 reads, 297.0 reads per million, 317 experiments

guggucccagaauCGGGGUUUUGAGGGCGAGAUGAGuuuauguuuuauccAACUGGCCCACAAAGUCCCGCUUUuggggucau
((((((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).))))))))))))

Structure

            u          A    G  A  A  uua 
guggucccagaa CGGGGUUUUG GGGC AG UG Gu   u
|||||||||||| |||||||||| |||| || || ||   g
uacugggguUUU GCCCUGAAAC CCCG UC Ac ua   u
            C          A    G  A  c  uuu 

Annotation confidence High

Genome context

25: 13248833-13248915 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-193b

Mature bta-miR-193b-5p

• Accession: MIMAT0050827
• Description: Bos taurus bta-miR-193b-5p mature miRNA
• Sequence: 14 - CGGGGUUUUGAGGGCGAGAUGAG - 36
• Evidence: experimental ; cloned [2]

Mature bta-miR-193b-3p

• Accession: MIMAT0009253
• Description: Bos taurus bta-miR-193b-3p mature miRNA
• Sequence: 51 - AACUGGCCCACAAAGUCCCGCUUU - 74
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125