Stem-loop bta-mir-99a

Accession

MI0004751

Description

Bos taurus bta-mir-99a precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

22 open access papers mention bta-mir-99a
(44 sentences)

Sequence

42058 reads, 1583 reads per million, 76 experiments

cccauuggcauaAACCCGUAGAUCCGAUCUUGUggugaaguggaccgcaCAAGCUCGCUUCUAUGGGUcugugucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUg ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu UGGGUAUCU  GCU GAACac gc   g
gu          c         UC   C      -  cag 

Annotation confidence High

Genome context

chr1: 19985570-19985650 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-99a

Mature bta-miR-99a-5p

• Accession: MIMAT0003537
• Description: Bos taurus bta-miR-99a-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAUCUUGU - 33
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

Mature bta-miR-99a-3p

• Accession: MIMAT0012533
• Description: Bos taurus bta-miR-99a-3p mature miRNA
• Sequence: 50 - CAAGCUCGCUUCUAUGGGU - 68
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677