Stem-loop bta-mir-26a-1

Accession

MI0009784

Description

Bos taurus bta-mir-26a-1 precursor miRNA mir-26

Gene
family

RF00244; mir-26

Literature search

46 open access papers mention bta-mir-26a-1
(146 sentences)

Sequence

136563994 reads, 69028.0 reads per million, 321 experiments

aaggccguggccucgUUCAAGUAAUCCAGGAUAGGCUgugcaggucccaaggggCCUAUUCUCGGUUACUUGCACGcggacgcgggccug
.((((((((.((.(((.(((((((((.((((((((((.(...........).)))))))))).))))))))).))).)).))).))))).

Structure

a     -   g  u   U         C          g gcag 
 aggcc gug cc cgU CAAGUAAUC AGGAUAGGCU u    g
 ||||| ||| || ||| ||||||||| |||||||||| |    u
 uccgg cgc gg GCA GUUCAUUGG UCUUAUCCgg g    c
g     g   a  c   C         C          g aacc 

Annotation confidence High

Genome context

22: 11420440-11420529 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-26a-1

Mature bta-miR-26a-5p

• Accession: MIMAT0003516
• Description: Bos taurus bta-miR-26a-5p mature miRNA
• Sequence: 16 - UUCAAGUAAUCCAGGAUAGGCU - 37
• Evidence: experimental ; cloned [2-3]

Mature bta-miR-26a-1-3p

• Accession: MIMAT0050840
• Description: Bos taurus bta-miR-26a-1-3p mature miRNA
• Sequence: 55 - CCUAUUCUCGGUUACUUGCACG - 76
• Evidence: experimental ; cloned [2-3]

References

1. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125