miRBase entry: bta-mir-181a-1

Stem-loop bta-mir-181a-1


Accession
MI0010484
Description
Bos taurus bta-mir-181a-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
33 open access papers mention bta-mir-181a-1
(245 sentences)

Sequence

792952 reads, 8643 reads per million, 78 experiments
ugagcuccgagguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauuaaaaaucaaaaccaucgaccguugauuguacccuauggccaaccaccaucuccacc
.(((......(((((((..((.(.(((.((((((..(((((((.((((.((........)).))))))))))))))))).))).).))..)).))))).....)))....

Structure
---u   cuccga     -  uc  u A   U      CU       A    g  auu 
    gag      gguug cu  ag g ACA UCAACG  GUCGGUG GUUu ga   a
    |||      ||||| ||  || | ||| ||||||  ||||||| |||| ||    
    cuc      ccaac gg  uc c ugu aguugc  cagcuac caaa cu   a
ccac   -uacca     c  ua  c a   u      --       -    a  aaa 


Annotation confidence High
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Genome context
chr16: 79940482-79940591 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-181a

Accession MIMAT0003543
Description Bos taurus bta-miR-181a mature miRNA
Sequence 24 - AACAUUCAACGCUGUCGGUGAGUU - 47
Evidence experimental
cloned [2]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125