Stem-loop bta-mir-181a-1

Accession

MI0010484

Description

Bos taurus bta-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

33 open access papers mention bta-mir-181a-1
(245 sentences)

Sequence

792952 reads, 8643 reads per million, 78 experiments

ugagcuccgagguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauuaaaaaucaaaaccaucgaccguugauuguacccuauggccaaccaccaucuccacc
.(((......(((((((..((.(.(((.((((((..(((((((.((((.((........)).))))))))))))))))).))).).))..)).))))).....)))....

Structure

---u   cuccga     -  uc  u A   U      CU       A    g  auu 
    gag      gguug cu  ag g ACA UCAACG  GUCGGUG GUUu ga   a
    |||      ||||| ||  || | ||| ||||||  ||||||| |||| ||    
    cuc      ccaac gg  uc c ugu aguugc  cagcuac caaa cu   a
ccac   -uacca     c  ua  c a   u      --       -    a  aaa 

Annotation confidence High

Genome context

chr16: 79940482-79940591 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-181a-1

Mature bta-miR-181a

• Accession: MIMAT0003543
• Description: Bos taurus bta-miR-181a mature miRNA
• Sequence: 24 - AACAUUCAACGCUGUCGGUGAGUU - 47
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125