Stem-loop bta-mir-485

Accession

MI0009842

Description

Bos taurus bta-mir-485 precursor miRNA

Literature search

37 open access papers mention bta-mir-485
(191 sentences)

Sequence

42435 reads, 35.0 reads per million, 298 experiments

acuugaagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUUuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure

   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uUUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa 

Annotation confidence High

Genome context

21: 65944602-65944674 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from bta-mir-485

Mature bta-miR-485-5p

• Accession: MIMAT0009328
• Description: Bos taurus bta-miR-485-5p mature miRNA
• Sequence: 9 - AGAGGCUGGCCGUGAUGAAUUC - 30
• Evidence: experimental ; cloned [3]

Mature bta-miR-485-3p

• Accession: MIMAT0061019
• Description: Bos taurus bta-miR-485-3p mature miRNA
• Sequence: 46 - GUCAUACACGGCUCUCCUCUCUU - 68
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125