Stem-loop bta-mir-424

Accession

MI0012212

Description

Bos taurus bta-mir-424 precursor miRNA mir-322

Gene
family

RF00737; mir-322

Literature search

86 open access papers mention bta-mir-424
(672 sentences)

Sequence

179723 reads, 118.0 reads per million, 316 experiments

ucguugacuccgaggggaugCAGCAGCAAUUCAUGUUUUGAAGugcuuuaaacgguuCAAAACGUGAGGCGCUGCUAUAcccccuugcgaggaagu
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).))).....

Structure

ucguuga   -       a  C      AA             G  cu 
       cuc cgagggg ug AGCAGC  UUCAUGUUUUGAA ug  u
       ||| ||||||| || ||||||  ||||||||||||| ||  u
       gag guucccc AU UCGUCG  GAGUGCAAAACuu gc  a
--ugaag   c       c  A      CG             g  aa 

Annotation confidence High

Genome context

X: 18242745-18242840 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from bta-mir-424

Mature bta-miR-424-5p

• Accession: MIMAT0013593
• Description: Bos taurus bta-miR-424-5p mature miRNA
• Sequence: 21 - CAGCAGCAAUUCAUGUUUUGAAG - 43
• Evidence: experimental ; cloned [2], Illumina [3]

Mature bta-miR-424-3p

• Accession: MIMAT0015304
• Description: Bos taurus bta-miR-424-3p mature miRNA
• Sequence: 58 - CAAAACGUGAGGCGCUGCUAUA - 79
• Evidence: experimental ; cloned [1-2], Illumina [3]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443


3. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026