Stem-loop bta-mir-224

Accession

MI0009783

Description

Bos taurus bta-mir-224 precursor miRNA mir-224

Gene
family

RF00680; mir-224

Literature search

88 open access papers mention bta-mir-224
(436 sentences)

Sequence

262658 reads, 152.0 reads per million, 317 experiments

gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaugguuguacauuguuucaAAAUGGUACCCUAGUGACUACAaagccc
(((((((..(((((((((.(((.((((((.(..((((......))))....).)))))).))))))))))))..)))))))

Structure

       CA         U   U      A --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU g    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||   
cccgaaA  UCAGUGAUC CCA GGUAAA c    uuac  g
       CA         -   U      a uuug    au 

Annotation confidence High

Genome context

X: 34446937-34447017 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-224

Mature bta-miR-224-5p

• Accession: MIMAT0009271
• Description: Bos taurus bta-miR-224-5p mature miRNA
• Sequence: 8 - CAAGUCACUAGUGGUUCCGUUUA - 30
• Evidence: experimental ; cloned [3]

Mature bta-miR-224-3p

• Accession: MIMAT0050839
• Description: Bos taurus bta-miR-224-3p mature miRNA
• Sequence: 54 - AAAUGGUACCCUAGUGACUACA - 75
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125