Stem-loop rno-mir-204

Accession

MI0000946

Description

Rattus norvegicus rno-mir-204 precursor miRNA

Literature search

38 open access papers mention rno-mir-204
(267 sentences)

Sequence

1427239 reads, 1240 reads per million, 491 experiments

ggcuacagcccuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUUcaauugucaucacuggc
(((....))).....(((((((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))).)).))).

Structure

ggcuacagcccuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acUUG AGGGAAACGG AGGGU CGga      a
--------------c   c  u    uua     C          A     -    ggaagu 

Annotation confidence High

Genome context

chr1: 240403000-240403109 [+]

Mature rno-miR-204-5p

• Accession: MIMAT0000877
• Description: Rattus norvegicus rno-miR-204-5p mature miRNA
• Sequence: 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-204-3p

• Accession: MIMAT0004739
• Description: Rattus norvegicus rno-miR-204-3p mature miRNA
• Sequence: 72 - GCUGGGAAGGCAAAGGGACGUU - 93
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249