miRBase entry: bta-mir-16b

Stem-loop bta-mir-16b


Accession
MI0004739
Description
Bos taurus bta-mir-16b precursor miRNA mir-15
Gene
family?
RF00455; mir-15

Literature search
33 open access papers mention bta-mir-16b
(72 sentences)

Sequence

116894 reads, 1506 reads per million, 75 experiments
cauacuuguuccgcugUAGCAGCACGUAAAUAUUGGCguaguaaaauaaauauuaaacaccaauauuauugugcugcuuuagcgugacaggga
....((((((.(((((.(((((((((..((((((((.((((((.......))))..)).))))))))..))))))))).))))).))))))..

Structure
caua      c     U         UA        C  --    aa 
    cuuguu cgcug AGCAGCACG  AAUAUUGG gu  agua  a
    |||||| ||||| |||||||||  |||||||| ||  ||||  u
    ggacag gcgau ucgucgugu  uuauaacc ca  uuau  a
--ag      u     u         ua        a  aa    aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 108321598-108321690 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-16b

Accession MIMAT0003525
Description Bos taurus bta-miR-16b mature miRNA
Sequence 17 - UAGCAGCACGUAAAUAUUGGC - 37
Evidence experimental
cloned [1-3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343