Stem-loop bta-mir-192

Accession

MI0005035

Description

Bos taurus bta-mir-192 precursor miRNA mir-192

Gene
family

RF00130; mir-192

Literature search

13 open access papers mention bta-mir-192
(36 sentences)

Sequence

10647625 reads, 91717 reads per million, 77 experiments

agaccgagugcacagggcuCUGACCUAUGAAUUGACAGCCAGugcucuuguguccccucuggcugccaauuccauaggucacagguauguucgccucaaugccagc
.....(((.(((((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).)))..))))).........

Structure

----agacc   u  --   g g  C         -     A       ugcucuu 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCAG       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u ga acuggauac uuaac gucgguc       u
cgaccguaa   -  cu   a g  c         c     c       uccccug 

Annotation confidence High

Genome context

chr29: 44018495-44018600 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-192

Mature bta-miR-192

• Accession: MIMAT0003820
• Description: Bos taurus bta-miR-192 mature miRNA
• Sequence: 20 - CUGACCUAUGAAUUGACAGCCAG - 42
• Evidence: experimental ; cloned [1,3], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677