Stem-loop bta-mir-494

Accession

MI0009848

Description

Bos taurus bta-mir-494 precursor miRNA

Literature search

60 open access papers mention bta-mir-494
(243 sentences)

Sequence

792574 reads, 325.0 reads per million, 305 experiments

ucgauacuugaaggagAGGUUAUCCGUGUUGUCUUCUCuuuauuuaugaUGAAACAUACACGGGAAACCUCuuuuuuaguaucaa
..((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))..

Structure

uc      u            A       -   C   -  uuu 
  gauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
  |||||| |||||||||||| ||||||| ||| ||| ||   u
  cuauga uuuuuuCUCCAA GGGCACA ACA AAG ag   u
aa      -            A       U   -   U  uau 

Annotation confidence High

Genome context

21: 65920313-65920397 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from bta-mir-494

Mature bta-miR-494-5p

• Accession: MIMAT0050871
• Description: Bos taurus bta-miR-494-5p mature miRNA
• Sequence: 17 - AGGUUAUCCGUGUUGUCUUCUC - 38
• Evidence: experimental ; cloned [3]

Mature bta-miR-494-3p

• Accession: MIMAT0009334
• Description: Bos taurus bta-miR-494-3p mature miRNA
• Sequence: 50 - UGAAACAUACACGGGAAACCUC - 71
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125