Stem-loop bta-mir-138-1

Accession

MI0009741

Description

Bos taurus bta-mir-138-1 precursor miRNA mir-138

Gene
family

RF00671; mir-138

Literature search

12 open access papers mention bta-mir-138-1
(19 sentences)

Sequence

111730 reads, 179.0 reads per million, 309 experiments

cuggcacggugcgguggggcAGCUGGUGUUGUGAAUCAGGCCGUcgccaaucagagaacgGCUACUUCACAACACCAGGGUcacaccccaccccagg
((((...((((.((((.(((..(((((((((((((...(((((((..........).))))))..))))))))))))).))).)))).)))))))).

Structure

-    cac    c    g   AG             UCA      - gcca 
 cugg   ggug ggug ggc  CUGGUGUUGUGAA   GGCCGU c    a
 ||||   |||| |||| |||  |||||||||||||   |||||| |     
 gacc   ccac ccac cUG  GACCACAACACUU   UCGgca g    u
g    ---    c    a   -G             -CA      a agac 

Annotation confidence High

Genome context

22: 16003758-16003854 [+]

Mature bta-miR-138-1-5p

• Accession: MIMAT0003813
• Description: Bos taurus bta-miR-138-1-5p mature miRNA
• Sequence: 21 - AGCUGGUGUUGUGAAUCAGGCCGU - 44
• Evidence: experimental ; cloned [2]

Mature bta-miR-138-1-3p

• Accession: MIMAT0050818
• Description: Bos taurus bta-miR-138-1-3p mature miRNA
• Sequence: 61 - GCUACUUCACAACACCAGGGU - 81
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125